BMI 205: Biomedical Informatics for Medicine

BMI 205: Biomedical Informatics for Medicine

Location: Li Ka Shing Center, Room 308, Stanford University
Time: Wednesdays 12:15-1:05, lunch will be provided and served at 12:00.
Videos: Recordings will be posted after each lecture.

Schedule, Spring 2012

Date	Presenter	Affiliation	Topic	Reading	Video	Questions
April 4	Chirag Patel	Pediatrics, Systems Medicine	“Enviromics” and Environment-wide Association Studies: Capturing the Breadth of Environmental Influence on Disease and Health	Environment and Disease Risks An Environment-Wide Association Study (EWAS) on type 2 diabetes mellitus Systematic evaluation of environmental factors: persistent pollutants and nutrients correlated with serum lipid levels	Video	Questions
April 11	Purvesh Khatri	Systems Medicine	Zooming in and out: methods for integrative analysis of large data sets	Comparison of multiplex meta analysis techniques for understanding the acute rejection of solid organ transplants Cell type-specific gene expression differences in complex tissues Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges	Video	Questions
April 18	Nigam Shah	Biomedical Informatics	The Age of Data-Driven Medicine	The Unreasonable Effectiveness of Data Annotation Analysis for Testing Drug Safety Signals using Unstructured Clinical Notes Using Temporal Patterns in Medical Records to Discern Adverse Drug Events from Indications	Video	Not needed
April 25	Class cancelled
May 2	Jerry Crabtree	Pathology, Developmental Biology	Our Genetically Fragile Intellect	Our Genetically Fragile Intellect Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes L1 retrotransposition in human neural progenitor cells A Systematic Survey of Loss-of-Function Variants in Human Protein-Coding Genes	Video
May 9	Bob Shafer	Medicine - Infectious Diseases & Pathology	Rationale and uses of a public HIV drug-resistance database		Video	Questions
May 16	Hunter Fraser	Biology	Gene expression adaptation in the evolution of yeast pathogenicity	Genome-wide approaches to the study of adaptive gene expression evolution	Video	Questions
May 23	Stuart Kim	Developmental Biology, Genetics	TBA	TBA	Video	Questions
May 30	Sylvia Plevritis	Radiology	TBA	TBA	Video	Questions
June 6	Mike Snyder	Genetics	Adventures in Personalized Omics	Personal Omics Profiling Reveals Dynamic Molecular and Medical Phenotypes	Video	Questions

Staff

Professor: Atul Butte, MD PhD
TA: Daniel Li (bmi205-daniel.li@stanford.edu)

Mailing List

Non-enrolled students who would like to receive announcements: please email me (bmi205-daniel.li@stanford.edu) your request with BMI 205 included in the subject line.

The only requirement is weekly attendance. If you are unable to attend, you will need to view the videotaped seminar and complete a short written assignment / answer questions based on the content of the seminar. These make-up questions will be posted shortly after lecture and are due prior to the next scheduled talk. Submit by emailing to bmi205-daniel.li@stanford.edu with BMI 205 at the beginning of the subject line.

BMI 205: Biomedical Informatics for Medicine

Schedule, Spring 2012

Staff

Mailing List

Requirements

Past Quarters